:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-enmix' .. highlight: bash bioconductor-enmix ================== .. conda:recipe:: bioconductor-enmix :replaces_section_title: :noindex: Quality control and analysis tools for Illumina DNA methylation BeadChip :homepage: https://bioconductor.org/packages/3.18/bioc/html/ENmix.html :license: Artistic-2.0 :recipe: /`bioconductor-enmix `_/`meta.yaml `_ Tools for quanlity control\, analysis and visulization of Illumina DNA methylation array data. .. conda:package:: bioconductor-enmix |downloads_bioconductor-enmix| |docker_bioconductor-enmix| :versions: .. raw:: html
1.38.01-01.36.01-01.34.0-01.30.0-01.28.2-01.26.8-01.26.0-01.25.1-01.22.0-0 ``1.38.01-0``,  ``1.36.01-0``,  ``1.34.0-0``,  ``1.30.0-0``,  ``1.28.2-0``,  ``1.26.8-0``,  ``1.26.0-0``,  ``1.25.1-0``,  ``1.22.0-0``,  ``1.20.3-0``,  ``1.18.0-0`` .. raw:: html
:depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-genefilter: ``>=1.84.0,<1.85.0`` :depends bioconductor-geneplotter: ``>=1.80.0,<1.81.0`` :depends bioconductor-illuminaio: ``>=0.44.0,<0.45.0`` :depends bioconductor-impute: ``>=1.76.0,<1.77.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-minfi: ``>=1.48.0,<1.49.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-doparallel: :depends r-dynamictreecut: :depends r-foreach: :depends r-gplots: :depends r-gtools: :depends r-irlba: :depends r-matrixstats: :depends r-quadprog: :depends r-rpmm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-enmix and update with:: mamba update bioconductor-enmix To create a new environment, run:: mamba create --name myenvname bioconductor-enmix with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-enmix: (see `bioconductor-enmix/tags`_ for valid values for ````) .. |downloads_bioconductor-enmix| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-enmix.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-enmix :alt: (downloads) .. |docker_bioconductor-enmix| image:: https://quay.io/repository/biocontainers/bioconductor-enmix/status :target: https://quay.io/repository/biocontainers/bioconductor-enmix .. _`bioconductor-enmix/tags`: https://quay.io/repository/biocontainers/bioconductor-enmix?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-enmix/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-enmix/README.html