:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-epitxdb.sc.saccer3' .. highlight: bash bioconductor-epitxdb.sc.saccer3 =============================== .. conda:recipe:: bioconductor-epitxdb.sc.saccer3 :replaces_section_title: :noindex: Annotation package for EpiTxDb objects :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/EpiTxDb.Sc.sacCer3.html :license: Artistic-2.0 :recipe: /`bioconductor-epitxdb.sc.saccer3 `_/`meta.yaml `_ Exposes an annotation databases generated from several sources by exposing these as EpiTxDb object. Generated for Saccharomyces cerevisiae\/sacCer3. .. conda:package:: bioconductor-epitxdb.sc.saccer3 |downloads_bioconductor-epitxdb.sc.saccer3| |docker_bioconductor-epitxdb.sc.saccer3| :versions: ``0.99.5-5``,  ``0.99.5-4``,  ``0.99.5-3``,  ``0.99.5-2``,  ``0.99.5-1``,  ``0.99.5-0``,  ``0.99.3-2``,  ``0.99.3-1``,  ``0.99.3-0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-epitxdb: ``>=1.14.0,<1.15.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-epitxdb.sc.saccer3 and update with:: mamba update bioconductor-epitxdb.sc.saccer3 To create a new environment, run:: mamba create --name myenvname bioconductor-epitxdb.sc.saccer3 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-epitxdb.sc.saccer3: (see `bioconductor-epitxdb.sc.saccer3/tags`_ for valid values for ````) .. |downloads_bioconductor-epitxdb.sc.saccer3| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-epitxdb.sc.saccer3.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-epitxdb.sc.saccer3 :alt: (downloads) .. |docker_bioconductor-epitxdb.sc.saccer3| image:: https://quay.io/repository/biocontainers/bioconductor-epitxdb.sc.saccer3/status :target: https://quay.io/repository/biocontainers/bioconductor-epitxdb.sc.saccer3 .. _`bioconductor-epitxdb.sc.saccer3/tags`: https://quay.io/repository/biocontainers/bioconductor-epitxdb.sc.saccer3?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-epitxdb.sc.saccer3/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-epitxdb.sc.saccer3/README.html