:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-etec16s' .. highlight: bash bioconductor-etec16s ==================== .. conda:recipe:: bioconductor-etec16s :replaces_section_title: :noindex: Individual\-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/etec16s.html :license: Artistic-2.0 :recipe: /`bioconductor-etec16s `_/`meta.yaml `_ 16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC \(H10407\) and subsequent treatment with ciprofloxacin. .. conda:package:: bioconductor-etec16s |downloads_bioconductor-etec16s| |docker_bioconductor-etec16s| :versions: .. raw:: html
1.30.0-01.28.0-01.26.0-01.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.16.0-0 ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-metagenomeseq: ``>=1.43.0,<1.44.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-etec16s and update with:: mamba update bioconductor-etec16s To create a new environment, run:: mamba create --name myenvname bioconductor-etec16s with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-etec16s: (see `bioconductor-etec16s/tags`_ for valid values for ````) .. |downloads_bioconductor-etec16s| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-etec16s.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-etec16s :alt: (downloads) .. |docker_bioconductor-etec16s| image:: https://quay.io/repository/biocontainers/bioconductor-etec16s/status :target: https://quay.io/repository/biocontainers/bioconductor-etec16s .. _`bioconductor-etec16s/tags`: https://quay.io/repository/biocontainers/bioconductor-etec16s?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-etec16s/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-etec16s/README.html