:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-expressionatlas' .. highlight: bash bioconductor-expressionatlas ============================ .. conda:recipe:: bioconductor-expressionatlas :replaces_section_title: :noindex: Download datasets from EMBL\-EBI Expression Atlas :homepage: https://bioconductor.org/packages/3.14/bioc/html/ExpressionAtlas.html :license: GPL (>= 3) :recipe: /`bioconductor-expressionatlas `_/`meta.yaml `_ This package is for searching for datasets in EMBL\-EBI Expression Atlas\, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object\, while microarray data is contained in an ExpressionSet or MAList object. .. conda:package:: bioconductor-expressionatlas |downloads_bioconductor-expressionatlas| |docker_bioconductor-expressionatlas| :versions: ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-httr: :depends r-xml: :depends r-xml2: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-expressionatlas and update with:: conda update bioconductor-expressionatlas or use the docker container:: docker pull quay.io/biocontainers/bioconductor-expressionatlas: (see `bioconductor-expressionatlas/tags`_ for valid values for ````) .. |downloads_bioconductor-expressionatlas| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-expressionatlas.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-expressionatlas :alt: (downloads) .. |docker_bioconductor-expressionatlas| image:: https://quay.io/repository/biocontainers/bioconductor-expressionatlas/status :target: https://quay.io/repository/biocontainers/bioconductor-expressionatlas .. _`bioconductor-expressionatlas/tags`: https://quay.io/repository/biocontainers/bioconductor-expressionatlas?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-expressionatlas/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-expressionatlas/README.html