:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-fgnet' .. highlight: bash bioconductor-fgnet ================== .. conda:recipe:: bioconductor-fgnet :replaces_section_title: :noindex: Functional Gene Networks derived from biological enrichment analyses :homepage: https://bioconductor.org/packages/3.18/bioc/html/FGNet.html :license: GPL (>= 2) :recipe: /`bioconductor-fgnet `_/`meta.yaml `_ Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface \(GUI\) and functions to perform the functional enrichment analysis through DAVID\, GeneTerm Linker\, gage \(GSEA\) and topGO. .. conda:package:: bioconductor-fgnet |downloads_bioconductor-fgnet| |docker_bioconductor-fgnet| :versions: .. raw:: html
3.36.0-13.36.0-03.34.0-03.32.0-03.28.0-03.26.0-03.24.0-13.24.0-03.23.1-0 ``3.36.0-1``,  ``3.36.0-0``,  ``3.34.0-0``,  ``3.32.0-0``,  ``3.28.0-0``,  ``3.26.0-0``,  ``3.24.0-1``,  ``3.24.0-0``,  ``3.23.1-0``,  ``3.22.0-0``,  ``3.20.0-0``,  ``3.18.0-1``,  ``3.18.0-0``,  ``3.16.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-hwriter: :depends r-igraph: ``>=0.6`` :depends r-plotrix: :depends r-png: :depends r-r.utils: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-xml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-fgnet and update with:: mamba update bioconductor-fgnet To create a new environment, run:: mamba create --name myenvname bioconductor-fgnet with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-fgnet: (see `bioconductor-fgnet/tags`_ for valid values for ````) .. |downloads_bioconductor-fgnet| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-fgnet.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-fgnet :alt: (downloads) .. |docker_bioconductor-fgnet| image:: https://quay.io/repository/biocontainers/bioconductor-fgnet/status :target: https://quay.io/repository/biocontainers/bioconductor-fgnet .. _`bioconductor-fgnet/tags`: https://quay.io/repository/biocontainers/bioconductor-fgnet?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fgnet/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-fgnet/README.html