:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-fgsea' .. highlight: bash bioconductor-fgsea ================== .. conda:recipe:: bioconductor-fgsea :replaces_section_title: :noindex: Fast Gene Set Enrichment Analysis :homepage: https://bioconductor.org/packages/3.14/bioc/html/fgsea.html :license: MIT + file LICENCE :recipe: /`bioconductor-fgsea `_/`meta.yaml `_ :links: biotools: :biotools:`fgsea`, doi: :doi:`10.1101/060012` The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p\-values\, which allows to use accurate stantard approaches to multiple hypothesis correction. .. conda:package:: bioconductor-fgsea |downloads_bioconductor-fgsea| |docker_bioconductor-fgsea| :versions: .. raw:: html
1.20.0-11.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-01.10.0-11.10.0-0 ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.1-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-bh: :depends r-data.table: :depends r-fastmatch: :depends r-ggplot2: ``>=2.2.0`` :depends r-gridextra: :depends r-matrix: :depends r-rcpp: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-fgsea and update with:: conda update bioconductor-fgsea or use the docker container:: docker pull quay.io/biocontainers/bioconductor-fgsea: (see `bioconductor-fgsea/tags`_ for valid values for ````) .. |downloads_bioconductor-fgsea| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-fgsea.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-fgsea :alt: (downloads) .. |docker_bioconductor-fgsea| image:: https://quay.io/repository/biocontainers/bioconductor-fgsea/status :target: https://quay.io/repository/biocontainers/bioconductor-fgsea .. _`bioconductor-fgsea/tags`: https://quay.io/repository/biocontainers/bioconductor-fgsea?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fgsea/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-fgsea/README.html