:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gatefinder' .. highlight: bash bioconductor-gatefinder ======================= .. conda:recipe:: bioconductor-gatefinder :replaces_section_title: :noindex: Projection\-based Gating Strategy Optimization for Flow and Mass Cytometry :homepage: https://bioconductor.org/packages/3.18/bioc/html/GateFinder.html :license: Artistic-2.0 :recipe: /`bioconductor-gatefinder `_/`meta.yaml `_ Given a vector of cluster memberships for a cell population\, identifies a sequence of gates \(polygon filters on 2D scatter plots\) for isolation of that cell type. .. conda:package:: bioconductor-gatefinder |downloads_bioconductor-gatefinder| |docker_bioconductor-gatefinder| :versions: .. raw:: html
1.22.0-01.20.0-01.18.0-01.14.0-01.12.0-01.10.0-11.10.0-01.8.0-01.6.0-0 ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.2.0-0`` .. raw:: html
:depends bioconductor-flowcore: ``>=2.14.0,<2.15.0`` :depends bioconductor-flowfp: ``>=1.60.0,<1.61.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-diptest: :depends r-mvoutlier: :depends r-splancs: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gatefinder and update with:: mamba update bioconductor-gatefinder To create a new environment, run:: mamba create --name myenvname bioconductor-gatefinder with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gatefinder: (see `bioconductor-gatefinder/tags`_ for valid values for ````) .. |downloads_bioconductor-gatefinder| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gatefinder.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gatefinder :alt: (downloads) .. |docker_bioconductor-gatefinder| image:: https://quay.io/repository/biocontainers/bioconductor-gatefinder/status :target: https://quay.io/repository/biocontainers/bioconductor-gatefinder .. _`bioconductor-gatefinder/tags`: https://quay.io/repository/biocontainers/bioconductor-gatefinder?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gatefinder/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gatefinder/README.html