:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-genegeneinter' .. highlight: bash bioconductor-genegeneinter ========================== .. conda:recipe:: bioconductor-genegeneinter :replaces_section_title: :noindex: Tools for Testing Gene\-Gene Interaction at the Gene Level :homepage: https://bioconductor.org/packages/3.18/bioc/html/GeneGeneInteR.html :license: GPL (>= 2) :recipe: /`bioconductor-genegeneinter `_/`meta.yaml `_ The aim of this package is to propose several methods for testing gene\-gene interaction in case\-control association studies. Such a test can be done by aggregating SNP\-SNP interaction tests performed at the SNP level \(SSI\) or by using gene\-gene multidimensionnal methods \(GGI\) methods. The package also proposes tools for a graphic display of the results. \. .. conda:package:: bioconductor-genegeneinter |downloads_bioconductor-genegeneinter| |docker_bioconductor-genegeneinter| :versions: .. raw:: html
1.28.0-01.26.0-01.24.0-11.24.0-01.20.0-21.20.0-11.20.0-01.18.0-01.14.0-0 ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.20.0-2``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.1,<1.55.0a0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0a0`` :depends bioconductor-snpstats: ``>=1.52.0,<1.53.0`` :depends bioconductor-snpstats: ``>=1.52.0,<1.53.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-factominer: :depends r-igraph: :depends r-kernlab: :depends r-mvtnorm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-genegeneinter and update with:: mamba update bioconductor-genegeneinter To create a new environment, run:: mamba create --name myenvname bioconductor-genegeneinter with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-genegeneinter: (see `bioconductor-genegeneinter/tags`_ for valid values for ````) .. |downloads_bioconductor-genegeneinter| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-genegeneinter.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-genegeneinter :alt: (downloads) .. |docker_bioconductor-genegeneinter| image:: https://quay.io/repository/biocontainers/bioconductor-genegeneinter/status :target: https://quay.io/repository/biocontainers/bioconductor-genegeneinter .. _`bioconductor-genegeneinter/tags`: https://quay.io/repository/biocontainers/bioconductor-genegeneinter?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genegeneinter/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-genegeneinter/README.html