:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-genomicstate' .. highlight: bash bioconductor-genomicstate ========================= .. conda:recipe:: bioconductor-genomicstate :replaces_section_title: :noindex: Build and access GenomicState objects for use with derfinder tools from sources like Gencode :homepage: https://bioconductor.org/packages/3.14/data/annotation/html/GenomicState.html :license: Artistic-2.0 :recipe: /`bioconductor-genomicstate `_/`meta.yaml `_ This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE. .. conda:package:: bioconductor-genomicstate |downloads_bioconductor-genomicstate| |docker_bioconductor-genomicstate| :versions: ``0.99.15-0``,  ``0.99.9-3``,  ``0.99.9-2``,  ``0.99.9-1``,  ``0.99.9-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-annotationhub: ``>=3.2.0,<3.3.0`` :depends bioconductor-bumphunter: ``>=1.36.0,<1.37.0`` :depends bioconductor-derfinder: ``>=1.28.0,<1.29.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicfeatures: ``>=1.46.0,<1.47.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-org.hs.eg.db: ``>=3.14.0,<3.15.0`` :depends bioconductor-rtracklayer: ``>=1.54.0,<1.55.0`` :depends curl: ``>=7.79.1,<8.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-genomicstate and update with:: conda update bioconductor-genomicstate or use the docker container:: docker pull quay.io/biocontainers/bioconductor-genomicstate: (see `bioconductor-genomicstate/tags`_ for valid values for ````) .. |downloads_bioconductor-genomicstate| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-genomicstate.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-genomicstate :alt: (downloads) .. |docker_bioconductor-genomicstate| image:: https://quay.io/repository/biocontainers/bioconductor-genomicstate/status :target: https://quay.io/repository/biocontainers/bioconductor-genomicstate .. _`bioconductor-genomicstate/tags`: https://quay.io/repository/biocontainers/bioconductor-genomicstate?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicstate/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-genomicstate/README.html