:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gesper' .. highlight: bash bioconductor-gesper =================== .. conda:recipe:: bioconductor-gesper :replaces_section_title: :noindex: Gene\-Specific Phenotype EstimatoR :homepage: https://bioconductor.org/packages/3.14/bioc/html/gespeR.html :license: GPL-3 :recipe: /`bioconductor-gesper `_/`meta.yaml `_ Estimates gene\-specific phenotypes from off\-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on\-targeted and off\-targeted genes\, using a regularized linear regression model. .. conda:package:: bioconductor-gesper |downloads_bioconductor-gesper| |docker_bioconductor-gesper| :versions: ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.14.0-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biomart: ``>=2.50.0,<2.51.0`` :depends bioconductor-cellhts2: ``>=2.58.0,<2.59.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-doparallel: :depends r-dplyr: :depends r-foreach: :depends r-ggplot2: :depends r-glmnet: :depends r-matrix: :depends r-reshape2: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-gesper and update with:: conda update bioconductor-gesper or use the docker container:: docker pull quay.io/biocontainers/bioconductor-gesper: (see `bioconductor-gesper/tags`_ for valid values for ````) .. |downloads_bioconductor-gesper| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gesper.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gesper :alt: (downloads) .. |docker_bioconductor-gesper| image:: https://quay.io/repository/biocontainers/bioconductor-gesper/status :target: https://quay.io/repository/biocontainers/bioconductor-gesper .. _`bioconductor-gesper/tags`: https://quay.io/repository/biocontainers/bioconductor-gesper?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gesper/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gesper/README.html