:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-geva'
.. highlight: bash

bioconductor-geva
=================

.. conda:recipe:: bioconductor-geva
   :replaces_section_title:
   :noindex:

   Gene Expression Variation Analysis \(GEVA\)

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/geva.html
   :license: LGPL-3
   :recipe: /`bioconductor-geva <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-geva>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-geva/meta.yaml>`_

   Statistic methods to evaluate variations of differential expression \(DE\) between multiple biological conditions. It takes into account the fold\-changes and p\-values from previous differential expression \(DE\) results that use large\-scale data \(\*e.g.\*\, microarray and RNA\-seq\) and evaluates which genes would react in response to the distinct experiments. This evaluation involves an unique pipeline of statistical methods\, including weighted summarization\, quantile detection\, cluster analysis\, and ANOVA tests\, in order to classify a subset of relevant genes whose DE is similar or dependent to certain biological factors.


.. conda:package:: bioconductor-geva

   |downloads_bioconductor-geva| |docker_bioconductor-geva|

   :versions:
      
      

      ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-dbscan: 
   :depends r-fastcluster: 
   :depends r-matrixstats: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-geva

   and update with::

      mamba update bioconductor-geva

  To create a new environment, run::

      mamba create --name myenvname bioconductor-geva

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-geva:<tag>

   (see `bioconductor-geva/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-geva| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-geva.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-geva
   :alt:   (downloads)
.. |docker_bioconductor-geva| image:: https://quay.io/repository/biocontainers/bioconductor-geva/status
   :target: https://quay.io/repository/biocontainers/bioconductor-geva
.. _`bioconductor-geva/tags`: https://quay.io/repository/biocontainers/bioconductor-geva?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-geva";
        var versions = ["1.10.0","1.8.0","1.6.0","1.2.0","1.0.0"];
    </script>






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.. raw:: html
    :file: ../../templates/package_dashboard.html

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