:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gladiatox' .. highlight: bash bioconductor-gladiatox ====================== .. conda:recipe:: bioconductor-gladiatox :replaces_section_title: :noindex: R Package for Processing High Content Screening data :homepage: https://bioconductor.org/packages/3.18/bioc/html/GladiaTOX.html :license: GPL-2 :recipe: /`bioconductor-gladiatox `_/`meta.yaml `_ GladiaTOX R package is an open\-source\, flexible solution to high\-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions\: it provides a web\-service solution to fetch raw data\; it computes severity scores and exports ToxPi formatted files\; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing. .. conda:package:: bioconductor-gladiatox |downloads_bioconductor-gladiatox| |docker_bioconductor-gladiatox| :versions: .. raw:: html
1.18.0-01.16.0-01.14.0-01.10.0-01.8.0-01.6.1-01.6.0-01.4.0-01.2.0-0 ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-brew: :depends r-data.table: ``>=1.9.4`` :depends r-dbi: :depends r-ggplot2: :depends r-ggrepel: :depends r-numderiv: :depends r-rcolorbrewer: :depends r-rcurl: :depends r-rjsonio: :depends r-rmariadb: :depends r-rsqlite: :depends r-stringr: :depends r-tidyr: :depends r-xml: :depends r-xtable: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gladiatox and update with:: mamba update bioconductor-gladiatox To create a new environment, run:: mamba create --name myenvname bioconductor-gladiatox with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gladiatox: (see `bioconductor-gladiatox/tags`_ for valid values for ````) .. |downloads_bioconductor-gladiatox| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gladiatox.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gladiatox :alt: (downloads) .. |docker_bioconductor-gladiatox| image:: https://quay.io/repository/biocontainers/bioconductor-gladiatox/status :target: https://quay.io/repository/biocontainers/bioconductor-gladiatox .. _`bioconductor-gladiatox/tags`: https://quay.io/repository/biocontainers/bioconductor-gladiatox?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gladiatox/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gladiatox/README.html