:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-goseq' .. highlight: bash bioconductor-goseq ================== .. conda:recipe:: bioconductor-goseq :replaces_section_title: :noindex: Gene Ontology analyser for RNA\-seq and other length biased data :homepage: https://bioconductor.org/packages/3.20/bioc/html/goseq.html :license: LGPL (>= 2) :recipe: /`bioconductor-goseq `_/`meta.yaml `_ :links: biotools: :biotools:`goseq` Detects Gene Ontology and\/or other user defined categories which are over\/under represented in RNA\-seq data. .. conda:package:: bioconductor-goseq |downloads_bioconductor-goseq| |docker_bioconductor-goseq| :versions: .. raw:: html
1.58.0-01.54.0-01.52.0-01.50.0-01.46.0-01.44.0-01.42.0-11.42.0-01.40.0-0 ``1.58.0-0``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-1``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-2``,  ``1.38.0-1``,  ``1.36.0-1``,  ``1.34.1-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.68.0,<1.69.0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0`` :depends bioconductor-genelendatabase: ``>=1.42.0,<1.43.0`` :depends bioconductor-genomeinfodb: ``>=1.42.0,<1.43.0`` :depends bioconductor-genomicfeatures: ``>=1.58.0,<1.59.0`` :depends bioconductor-go.db: ``>=3.20.0,<3.21.0`` :depends bioconductor-rtracklayer: ``>=1.66.0,<1.67.0`` :depends r-base: ``>=4.4,<4.5.0a0`` :depends r-biasedurn: :depends r-mgcv: :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-goseq and update with:: mamba update bioconductor-goseq To create a new environment, run:: mamba create --name myenvname bioconductor-goseq with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-goseq: (see `bioconductor-goseq/tags`_ for valid values for ````) .. |downloads_bioconductor-goseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-goseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-goseq :alt: (downloads) .. |docker_bioconductor-goseq| image:: https://quay.io/repository/biocontainers/bioconductor-goseq/status :target: https://quay.io/repository/biocontainers/bioconductor-goseq .. _`bioconductor-goseq/tags`: https://quay.io/repository/biocontainers/bioconductor-goseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-goseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-goseq/README.html