:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gsgalgor' .. highlight: bash bioconductor-gsgalgor ===================== .. conda:recipe:: bioconductor-gsgalgor :replaces_section_title: :noindex: An Evolutionary Framework for the Identification and Study of Prognostic Gene Expression Signatures in Cancer :homepage: https://bioconductor.org/packages/3.18/bioc/html/GSgalgoR.html :license: MIT + file LICENSE :recipe: /`bioconductor-gsgalgor `_/`meta.yaml `_ A multi\-objective optimization algorithm for disease sub\-type discovery based on a non\-dominated sorting genetic algorithm. The \'Galgo\' framework combines the advantages of clustering algorithms for grouping heterogeneous \'omics\' data and the searching properties of genetic algorithms for feature selection. The algorithm search for the optimal number of clusters determination considering the features that maximize the survival difference between sub\-types while keeping cluster consistency high. .. conda:package:: bioconductor-gsgalgor |downloads_bioconductor-gsgalgor| |docker_bioconductor-gsgalgor| :versions: ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.2.1-0``,  ``1.0.0-1``,  ``1.0.0-0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cluster: :depends r-doparallel: :depends r-foreach: :depends r-matchingr: :depends r-nsga2r: :depends r-proxy: :depends r-survival: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gsgalgor and update with:: mamba update bioconductor-gsgalgor To create a new environment, run:: mamba create --name myenvname bioconductor-gsgalgor with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gsgalgor: (see `bioconductor-gsgalgor/tags`_ for valid values for ````) .. |downloads_bioconductor-gsgalgor| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gsgalgor.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gsgalgor :alt: (downloads) .. |docker_bioconductor-gsgalgor| image:: https://quay.io/repository/biocontainers/bioconductor-gsgalgor/status :target: https://quay.io/repository/biocontainers/bioconductor-gsgalgor .. _`bioconductor-gsgalgor/tags`: https://quay.io/repository/biocontainers/bioconductor-gsgalgor?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsgalgor/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gsgalgor/README.html