:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gsreg' .. highlight: bash bioconductor-gsreg ================== .. conda:recipe:: bioconductor-gsreg :replaces_section_title: :noindex: Gene Set Regulation \(GS\-Reg\) :homepage: https://bioconductor.org/packages/3.14/bioc/html/GSReg.html :license: GPL-2 :recipe: /`bioconductor-gsreg `_/`meta.yaml `_ :links: biotools: :biotools:`gsreg`, doi: :doi:`10.4137/CIN.S14066` A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation \(DIRAC\) and gene set Expression Variation Analysis \(EVA\) methods. For detecting Differentially Spliced genes\, it provides an implementation of the Spliced\-EVA \(SEVA\). .. conda:package:: bioconductor-gsreg |downloads_bioconductor-gsreg| |docker_bioconductor-gsreg| :versions: .. raw:: html
1.28.0-11.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-0 ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-genomicfeatures: ``>=1.46.0,<1.47.0`` :depends bioconductor-homo.sapiens: ``>=1.3.0,<1.4.0`` :depends bioconductor-org.hs.eg.db: ``>=3.14.0,<3.15.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-gsreg and update with:: conda update bioconductor-gsreg or use the docker container:: docker pull quay.io/biocontainers/bioconductor-gsreg: (see `bioconductor-gsreg/tags`_ for valid values for ````) .. |downloads_bioconductor-gsreg| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gsreg.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gsreg :alt: (downloads) .. |docker_bioconductor-gsreg| image:: https://quay.io/repository/biocontainers/bioconductor-gsreg/status :target: https://quay.io/repository/biocontainers/bioconductor-gsreg .. _`bioconductor-gsreg/tags`: https://quay.io/repository/biocontainers/bioconductor-gsreg?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsreg/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gsreg/README.html