:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gsri' .. highlight: bash bioconductor-gsri ================= .. conda:recipe:: bioconductor-gsri :replaces_section_title: :noindex: Gene Set Regulation Index :homepage: https://bioconductor.org/packages/3.14/bioc/html/GSRI.html :license: GPL-3 :recipe: /`bioconductor-gsri `_/`meta.yaml `_ :links: biotools: :biotools:`gsri`, doi: :doi:`10.1038/nmeth.3252` The GSRI package estimates the number of differentially expressed genes in gene sets\, utilizing the concept of the Gene Set Regulation Index \(GSRI\). .. conda:package:: bioconductor-gsri |downloads_bioconductor-gsri| |docker_bioconductor-gsri| :versions: .. raw:: html
2.42.0-02.40.0-02.38.0-12.38.0-02.36.0-02.34.0-02.32.0-12.30.0-02.28.0-0 ``2.42.0-0``,  ``2.40.0-0``,  ``2.38.0-1``,  ``2.38.0-0``,  ``2.36.0-0``,  ``2.34.0-0``,  ``2.32.0-1``,  ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-genefilter: ``>=1.76.0,<1.77.0`` :depends bioconductor-gseabase: ``>=1.56.0,<1.57.0`` :depends bioconductor-les: ``>=1.44.0,<1.45.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-fdrtool: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-gsri and update with:: conda update bioconductor-gsri or use the docker container:: docker pull quay.io/biocontainers/bioconductor-gsri: (see `bioconductor-gsri/tags`_ for valid values for ````) .. |downloads_bioconductor-gsri| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gsri.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gsri :alt: (downloads) .. |docker_bioconductor-gsri| image:: https://quay.io/repository/biocontainers/bioconductor-gsri/status :target: https://quay.io/repository/biocontainers/bioconductor-gsri .. _`bioconductor-gsri/tags`: https://quay.io/repository/biocontainers/bioconductor-gsri?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsri/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gsri/README.html