:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gsri' .. highlight: bash bioconductor-gsri ================= .. conda:recipe:: bioconductor-gsri :replaces_section_title: :noindex: Gene Set Regulation Index :homepage: https://bioconductor.org/packages/3.18/bioc/html/GSRI.html :license: GPL-3 :recipe: /`bioconductor-gsri `_/`meta.yaml `_ :links: biotools: :biotools:`gsri`, doi: :doi:`10.1038/nmeth.3252` The GSRI package estimates the number of differentially expressed genes in gene sets\, utilizing the concept of the Gene Set Regulation Index \(GSRI\). .. conda:package:: bioconductor-gsri |downloads_bioconductor-gsri| |docker_bioconductor-gsri| :versions: .. raw:: html
2.50.0-02.48.0-02.46.0-02.42.0-02.40.0-02.38.0-12.38.0-02.36.0-02.34.0-0 ``2.50.0-0``,  ``2.48.0-0``,  ``2.46.0-0``,  ``2.42.0-0``,  ``2.40.0-0``,  ``2.38.0-1``,  ``2.38.0-0``,  ``2.36.0-0``,  ``2.34.0-0``,  ``2.32.0-1``,  ``2.30.0-0``,  ``2.28.0-0``,  ``2.26.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-genefilter: ``>=1.84.0,<1.85.0`` :depends bioconductor-gseabase: ``>=1.64.0,<1.65.0`` :depends bioconductor-les: ``>=1.52.0,<1.53.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-fdrtool: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gsri and update with:: mamba update bioconductor-gsri To create a new environment, run:: mamba create --name myenvname bioconductor-gsri with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gsri: (see `bioconductor-gsri/tags`_ for valid values for ````) .. |downloads_bioconductor-gsri| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gsri.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gsri :alt: (downloads) .. |docker_bioconductor-gsri| image:: https://quay.io/repository/biocontainers/bioconductor-gsri/status :target: https://quay.io/repository/biocontainers/bioconductor-gsri .. _`bioconductor-gsri/tags`: https://quay.io/repository/biocontainers/bioconductor-gsri?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gsri/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gsri/README.html