:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-gtrellis' .. highlight: bash bioconductor-gtrellis ===================== .. conda:recipe:: bioconductor-gtrellis :replaces_section_title: :noindex: Genome Level Trellis Layout :homepage: https://bioconductor.org/packages/3.18/bioc/html/gtrellis.html :license: MIT + file LICENSE :recipe: /`bioconductor-gtrellis `_/`meta.yaml `_ :links: biotools: :biotools:`gtrellis` Genome level Trellis graph visualizes genomic data conditioned by genomic categories \(e.g. chromosomes\). For each genomic category\, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self\-defined graphics in the plot. .. conda:package:: bioconductor-gtrellis |downloads_bioconductor-gtrellis| |docker_bioconductor-gtrellis| :versions: .. raw:: html
1.34.0-01.32.0-01.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-0 ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.14.0-0``,  ``1.12.1-0``,  ``1.11.1-0`` .. raw:: html
:depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-circlize: ``>=0.4.8`` :depends r-getoptlong: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-gtrellis and update with:: mamba update bioconductor-gtrellis To create a new environment, run:: mamba create --name myenvname bioconductor-gtrellis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-gtrellis: (see `bioconductor-gtrellis/tags`_ for valid values for ````) .. |downloads_bioconductor-gtrellis| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-gtrellis.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-gtrellis :alt: (downloads) .. |docker_bioconductor-gtrellis| image:: https://quay.io/repository/biocontainers/bioconductor-gtrellis/status :target: https://quay.io/repository/biocontainers/bioconductor-gtrellis .. _`bioconductor-gtrellis/tags`: https://quay.io/repository/biocontainers/bioconductor-gtrellis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gtrellis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-gtrellis/README.html