:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-harmandata'
.. highlight: bash

bioconductor-harmandata
=======================

.. conda:recipe:: bioconductor-harmandata
   :replaces_section_title:
   :noindex:

   Data for the Harman package

   :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/HarmanData.html
   :license: GPL-3
   :recipe: /`bioconductor-harmandata <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-harmandata>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-harmandata/meta.yaml>`_

   Datasets of accompany Harman\, a PCA and constrained optimisation based technique. Contains three example datasets\: IMR90\, Human lung fibroblast cells exposed to nitric oxide\; NPM\, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non\-pregnant mice\; OLF\; an experiment to gauge the response of human olfactory neurosphere\-derived \(hONS\) cells to ZnO nanoparticles. Since version 1.24\, this package also contains the Infinium5 dataset\, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data\, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE\_sample file as exampling for the new methylation clustering functionality in Harman.


.. conda:package:: bioconductor-harmandata

   |downloads_bioconductor-harmandata| |docker_bioconductor-harmandata|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.30.0-0</code>,  <code>1.28.0-0</code>,  <code>1.25.0-0</code>,  <code>1.22.0-1</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.0-1</code>,  <code>1.18.0-0</code>,  <code>1.17.0-0</code>,  </span></summary>
      

      ``1.30.0-0``,  ``1.28.0-0``,  ``1.25.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.17.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-data-packages: ``>=20231203``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-harmandata

   and update with::

      mamba update bioconductor-harmandata

  To create a new environment, run::

      mamba create --name myenvname bioconductor-harmandata

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-harmandata:<tag>

   (see `bioconductor-harmandata/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-harmandata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-harmandata.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-harmandata
   :alt:   (downloads)
.. |docker_bioconductor-harmandata| image:: https://quay.io/repository/biocontainers/bioconductor-harmandata/status
   :target: https://quay.io/repository/biocontainers/bioconductor-harmandata
.. _`bioconductor-harmandata/tags`: https://quay.io/repository/biocontainers/bioconductor-harmandata?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-harmandata";
        var versions = ["1.30.0","1.28.0","1.25.0","1.22.0","1.22.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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