:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-hd2013sgi' .. highlight: bash bioconductor-hd2013sgi ====================== .. conda:recipe:: bioconductor-hd2013sgi :replaces_section_title: :noindex: Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/HD2013SGI.html :license: Artistic-2.0 :recipe: /`bioconductor-hd2013sgi `_/`meta.yaml `_ This package contains the experimental data and a complete executable transcript \(vignette\) of the analysis of the HCT116 genetic interaction matrix presented in the paper \"Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping\" by C. Laufer\, B. Fischer\, M. Billmann\, W. Huber\, M. Boutros\; Nature Methods \(2013\) 10\:427\-31. doi\: 10.1038\/nmeth.2436. .. conda:package:: bioconductor-hd2013sgi |downloads_bioconductor-hd2013sgi| |docker_bioconductor-hd2013sgi| :versions: .. raw:: html
1.42.0-01.40.0-01.38.0-01.34.0-11.34.0-01.32.0-01.30.0-11.30.0-01.28.0-0 ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-ebimage: ``>=4.44.0,<4.45.0`` :depends bioconductor-geneplotter: ``>=1.80.0,<1.81.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-splots: ``>=1.68.0,<1.69.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-gplots: :depends r-lsd: :depends r-rcolorbrewer: :depends r-vcd: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-hd2013sgi and update with:: mamba update bioconductor-hd2013sgi To create a new environment, run:: mamba create --name myenvname bioconductor-hd2013sgi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-hd2013sgi: (see `bioconductor-hd2013sgi/tags`_ for valid values for ````) .. |downloads_bioconductor-hd2013sgi| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-hd2013sgi.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-hd2013sgi :alt: (downloads) .. |docker_bioconductor-hd2013sgi| image:: https://quay.io/repository/biocontainers/bioconductor-hd2013sgi/status :target: https://quay.io/repository/biocontainers/bioconductor-hd2013sgi .. _`bioconductor-hd2013sgi/tags`: https://quay.io/repository/biocontainers/bioconductor-hd2013sgi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hd2013sgi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-hd2013sgi/README.html