:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-htqpcr' .. highlight: bash bioconductor-htqpcr =================== .. conda:recipe:: bioconductor-htqpcr :replaces_section_title: :noindex: Automated analysis of high\-throughput qPCR data :homepage: https://bioconductor.org/packages/3.18/bioc/html/HTqPCR.html :license: Artistic-2.0 :recipe: /`bioconductor-htqpcr `_/`meta.yaml `_ :links: biotools: :biotools:`htqpcr` Analysis of Ct values from high throughput quantitative real\-time PCR \(qPCR\) assays across multiple conditions or replicates. The input data can be from spatially\-defined formats such ABI TaqMan Low Density Arrays or OpenArray\; LightCycler from Roche Applied Science\; the CFX plates from Bio\-Rad Laboratories\; conventional 96\- or 384\-well plates\; or microfluidic devices such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data loading\, quality assessment\, normalization\, visualization and parametric or non\-parametric testing for statistical significance in Ct values between features \(e.g. genes\, microRNAs\). .. conda:package:: bioconductor-htqpcr |downloads_bioconductor-htqpcr| |docker_bioconductor-htqpcr| :versions: .. raw:: html
1.56.0-01.54.0-01.52.0-01.48.0-01.46.0-01.44.0-11.44.0-01.42.0-01.40.0-0 ``1.56.0-0``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0`` .. raw:: html
:depends bioconductor-affy: ``>=1.80.0,<1.81.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-gplots: :depends r-rcolorbrewer: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-htqpcr and update with:: mamba update bioconductor-htqpcr To create a new environment, run:: mamba create --name myenvname bioconductor-htqpcr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-htqpcr: (see `bioconductor-htqpcr/tags`_ for valid values for ````) .. |downloads_bioconductor-htqpcr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-htqpcr.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-htqpcr :alt: (downloads) .. |docker_bioconductor-htqpcr| image:: https://quay.io/repository/biocontainers/bioconductor-htqpcr/status :target: https://quay.io/repository/biocontainers/bioconductor-htqpcr .. _`bioconductor-htqpcr/tags`: https://quay.io/repository/biocontainers/bioconductor-htqpcr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-htqpcr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-htqpcr/README.html