:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-htsfilter' .. highlight: bash bioconductor-htsfilter ====================== .. conda:recipe:: bioconductor-htsfilter :replaces_section_title: :noindex: Filter replicated high\-throughput transcriptome sequencing data :homepage: https://bioconductor.org/packages/3.20/bioc/html/HTSFilter.html :license: Artistic-2.0 :recipe: /`bioconductor-htsfilter `_/`meta.yaml `_ This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low\, constant levels of expression across one or more experimental conditions. .. conda:package:: bioconductor-htsfilter |downloads_bioconductor-htsfilter| |docker_bioconductor-htsfilter| :versions: .. raw:: html
1.46.0-01.42.0-01.40.0-01.38.0-01.34.0-01.32.0-01.28.0-01.26.0-01.24.0-1 ``1.46.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.1-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.66.0,<2.67.0`` :depends bioconductor-biocparallel: ``>=1.40.0,<1.41.0`` :depends bioconductor-deseq2: ``>=1.46.0,<1.47.0`` :depends bioconductor-edger: ``>=4.4.0,<4.5.0`` :depends r-base: ``>=4.4,<4.5.0a0`` :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-htsfilter and update with:: mamba update bioconductor-htsfilter To create a new environment, run:: mamba create --name myenvname bioconductor-htsfilter with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-htsfilter: (see `bioconductor-htsfilter/tags`_ for valid values for ````) .. |downloads_bioconductor-htsfilter| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-htsfilter.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-htsfilter :alt: (downloads) .. |docker_bioconductor-htsfilter| image:: https://quay.io/repository/biocontainers/bioconductor-htsfilter/status :target: https://quay.io/repository/biocontainers/bioconductor-htsfilter .. _`bioconductor-htsfilter/tags`: https://quay.io/repository/biocontainers/bioconductor-htsfilter?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-htsfilter/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-htsfilter/README.html