:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-htsfilter'
.. highlight: bash

bioconductor-htsfilter
======================

.. conda:recipe:: bioconductor-htsfilter
   :replaces_section_title:
   :noindex:

   Filter replicated high\-throughput transcriptome sequencing data

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/HTSFilter.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-htsfilter <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-htsfilter>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-htsfilter/meta.yaml>`_
   :links: biotools: :biotools:`htsfilter`

   This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low\, constant levels of expression across one or more experimental conditions.


.. conda:package:: bioconductor-htsfilter

   |downloads_bioconductor-htsfilter| |docker_bioconductor-htsfilter|

   :versions:
      
      

      ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.1-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``

      

   
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends bioconductor-biocparallel: ``>=1.22.0,<1.23.0``
   :depends bioconductor-deseq: ``>=1.39.0,<1.40.0``
   :depends bioconductor-deseq2: ``>=1.28.0,<1.29.0``
   :depends bioconductor-edger: ``>=3.30.0,<3.31.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-htsfilter

   and update with::

      conda update bioconductor-htsfilter

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-htsfilter:<tag>

   (see `bioconductor-htsfilter/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-htsfilter| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-htsfilter.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-htsfilter
   :alt:   (downloads)
.. |docker_bioconductor-htsfilter| image:: https://quay.io/repository/biocontainers/bioconductor-htsfilter/status
   :target: https://quay.io/repository/biocontainers/bioconductor-htsfilter
.. _`bioconductor-htsfilter/tags`: https://quay.io/repository/biocontainers/bioconductor-htsfilter?tab=tags







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