:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-iasva' .. highlight: bash bioconductor-iasva ================== .. conda:recipe:: bioconductor-iasva :replaces_section_title: :noindex: Iteratively Adjusted Surrogate Variable Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/iasva.html :license: GPL-2 :recipe: /`bioconductor-iasva `_/`meta.yaml `_ Iteratively Adjusted Surrogate Variable Analysis \(IA\-SVA\) is a statistical framework to uncover hidden sources of variation even when these sources are correlated. IA\-SVA provides a flexible methodology to i\) identify a hidden factor for unwanted heterogeneity while adjusting for all known factors\; ii\) test the significance of the putative hidden factor for explaining the unmodeled variation in the data\; and iii\)\, if significant\, use the estimated factor as an additional known factor in the next iteration to uncover further hidden factors. .. conda:package:: bioconductor-iasva |downloads_bioconductor-iasva| |docker_bioconductor-iasva| :versions: .. raw:: html
1.20.0-01.18.0-01.16.0-01.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-0 ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-cluster: :depends r-irlba: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-iasva and update with:: mamba update bioconductor-iasva To create a new environment, run:: mamba create --name myenvname bioconductor-iasva with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-iasva: (see `bioconductor-iasva/tags`_ for valid values for ````) .. |downloads_bioconductor-iasva| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-iasva.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-iasva :alt: (downloads) .. |docker_bioconductor-iasva| image:: https://quay.io/repository/biocontainers/bioconductor-iasva/status :target: https://quay.io/repository/biocontainers/bioconductor-iasva .. _`bioconductor-iasva/tags`: https://quay.io/repository/biocontainers/bioconductor-iasva?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-iasva/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-iasva/README.html