:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-ibbig'
.. highlight: bash

bioconductor-ibbig
==================

.. conda:recipe:: bioconductor-ibbig
   :replaces_section_title:
   :noindex:

   Iterative Binary Biclustering of Genesets

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/iBBiG.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-ibbig <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ibbig>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ibbig/meta.yaml>`_

   iBBiG is a bi\-clustering algorithm which is optimizes for binary data analysis. We apply it to meta\-gene set analysis of large numbers of gene expression datasets. The iterative algorithm extracts groups of phenotypes from multiple studies that are associated with similar gene sets. iBBiG does not require prior knowledge of the number or scale of clusters and allows discovery of clusters with diverse sizes


.. conda:package:: bioconductor-ibbig

   |downloads_bioconductor-ibbig| |docker_bioconductor-ibbig|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.46.0-1</code>,  <code>1.46.0-0</code>,  <code>1.44.0-0</code>,  <code>1.42.0-2</code>,  <code>1.42.0-1</code>,  <code>1.42.0-0</code>,  <code>1.38.0-2</code>,  <code>1.38.0-1</code>,  <code>1.38.0-0</code>,  </span></summary>
      

      ``1.46.0-1``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-2``,  ``1.42.0-1``,  ``1.42.0-0``,  ``1.38.0-2``,  ``1.38.0-1``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.1-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-ade4: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-biclust: 
   :depends r-xtable: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-ibbig

   and update with::

      mamba update bioconductor-ibbig

  To create a new environment, run::

      mamba create --name myenvname bioconductor-ibbig

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-ibbig:<tag>

   (see `bioconductor-ibbig/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-ibbig| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ibbig.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-ibbig
   :alt:   (downloads)
.. |docker_bioconductor-ibbig| image:: https://quay.io/repository/biocontainers/bioconductor-ibbig/status
   :target: https://quay.io/repository/biocontainers/bioconductor-ibbig
.. _`bioconductor-ibbig/tags`: https://quay.io/repository/biocontainers/bioconductor-ibbig?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-ibbig";
        var versions = ["1.46.0","1.46.0","1.44.0","1.42.0","1.42.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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