:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-imagehts' .. highlight: bash bioconductor-imagehts ===================== .. conda:recipe:: bioconductor-imagehts :replaces_section_title: :noindex: Analysis of high\-throughput microscopy\-based screens :homepage: https://bioconductor.org/packages/3.14/bioc/html/imageHTS.html :license: LGPL-2.1 :recipe: /`bioconductor-imagehts `_/`meta.yaml `_ imageHTS is an R package dedicated to the analysis of high\-throughput microscopy\-based screens. The package provides a modular and extensible framework to segment cells\, extract quantitative cell features\, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments\, imageHTS provides a standardized access to remote data and facilitates the dissemination of high\-throughput microscopy\-based datasets. .. conda:package:: bioconductor-imagehts |downloads_bioconductor-imagehts| |docker_bioconductor-imagehts| :versions: ``1.44.0-0``,  ``1.42.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.26.0-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-cellhts2: ``>=2.58.0,<2.59.0`` :depends bioconductor-ebimage: ``>=4.36.0,<4.37.0`` :depends bioconductor-vsn: ``>=3.62.0,<3.63.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-e1071: :depends r-hwriter: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-imagehts and update with:: conda update bioconductor-imagehts or use the docker container:: docker pull quay.io/biocontainers/bioconductor-imagehts: (see `bioconductor-imagehts/tags`_ for valid values for ````) .. |downloads_bioconductor-imagehts| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-imagehts.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-imagehts :alt: (downloads) .. |docker_bioconductor-imagehts| image:: https://quay.io/repository/biocontainers/bioconductor-imagehts/status :target: https://quay.io/repository/biocontainers/bioconductor-imagehts .. _`bioconductor-imagehts/tags`: https://quay.io/repository/biocontainers/bioconductor-imagehts?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-imagehts/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-imagehts/README.html