:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-imagehts'
.. highlight: bash

bioconductor-imagehts
=====================

.. conda:recipe:: bioconductor-imagehts
   :replaces_section_title:

   imageHTS is an R package dedicated to the analysis of high\-throughput microscopy\-based screens. The package provides a modular and extensible framework to segment cells\, extract quantitative cell features\, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments\, imageHTS provides a standardized access to remote data and facilitates the dissemination of high\-throughput microscopy\-based datasets.

   :homepage: https://bioconductor.org/packages/3.9/bioc/html/imageHTS.html
   :license: LGPL-2.1
   :recipe: /`bioconductor-imagehts <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-imagehts>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-imagehts/meta.yaml>`_
   :links: biotools: :biotools:`imagehts`, doi: :doi:`10.1038/nmeth.3252`

   


.. conda:package:: bioconductor-imagehts

   |downloads_bioconductor-imagehts| |docker_bioconductor-imagehts|

   :versions: 1.32.0-0, 1.30.0-0, 1.26.0-0
   
   :depends bioconductor-biobase: >=2.42.0,<2.43.0
   :depends bioconductor-cellhts2: >=2.46.0,<2.47.0
   :depends bioconductor-ebimage: >=4.24.0,<4.25.0
   :depends bioconductor-vsn: >=3.50.0,<3.51.0
   :depends r-base: >=3.5.1,<3.5.2.0a0
   :depends r-e1071: 
   :depends r-hwriter: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-imagehts

   and update with::

      conda update bioconductor-imagehts

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-imagehts:<tag>

   (see `bioconductor-imagehts/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-imagehts| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-imagehts.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-imagehts
   :alt:   (downloads)
.. |docker_bioconductor-imagehts| image:: https://quay.io/repository/biocontainers/bioconductor-imagehts/status
   :target: https://quay.io/repository/biocontainers/bioconductor-imagehts
.. _`bioconductor-imagehts/tags`: https://quay.io/repository/biocontainers/bioconductor-imagehts?tab=tags







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