:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-inpas'
.. highlight: bash

bioconductor-inpas
==================

.. conda:recipe:: bioconductor-inpas
   :replaces_section_title:

   InPAS\: a bioconductor package for the identification of novel alternative PolyAdenylation Sites \(PAS\) using RNA\-seq data

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/InPAS.html
   :license: GPL (>= 2)
   :recipe: /`bioconductor-inpas <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-inpas>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-inpas/meta.yaml>`_

   Alternative polyadenylation \(APA\) is one of the important post\-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA\-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal\-priming.


.. conda:package:: bioconductor-inpas

   |downloads_bioconductor-inpas| |docker_bioconductor-inpas|

   :versions: 1.20.0-0, 1.18.0-0, 1.16.3-0, 1.14.1-0
   
   :depends bioconductor-annotationdbi: >=1.50.0,<1.51.0
   :depends bioconductor-biobase: >=2.48.0,<2.49.0
   :depends bioconductor-biocparallel: >=1.22.0,<1.23.0
   :depends bioconductor-bsgenome: >=1.56.0,<1.57.0
   :depends bioconductor-cleanupdtseq: >=1.26.0,<1.27.0
   :depends bioconductor-genomeinfodb: >=1.24.0,<1.25.0
   :depends bioconductor-genomicfeatures: >=1.40.0,<1.41.0
   :depends bioconductor-genomicranges: >=1.40.0,<1.41.0
   :depends bioconductor-gviz: >=1.32.0,<1.33.0
   :depends bioconductor-iranges: >=2.22.0,<2.23.0
   :depends bioconductor-limma: >=3.44.0,<3.45.0
   :depends bioconductor-preprocesscore: >=1.50.0,<1.51.0
   :depends bioconductor-s4vectors: >=0.26.0,<0.27.0
   :depends r-base: >=4.0,<4.1.0a0
   :depends r-depmixs4: 
   :depends r-seqinr: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-inpas

   and update with::

      conda update bioconductor-inpas

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-inpas:<tag>

   (see `bioconductor-inpas/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-inpas| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-inpas.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-inpas
   :alt:   (downloads)
.. |docker_bioconductor-inpas| image:: https://quay.io/repository/biocontainers/bioconductor-inpas/status
   :target: https://quay.io/repository/biocontainers/bioconductor-inpas
.. _`bioconductor-inpas/tags`: https://quay.io/repository/biocontainers/bioconductor-inpas?tab=tags







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