:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-inpas' .. highlight: bash bioconductor-inpas ================== .. conda:recipe:: bioconductor-inpas :replaces_section_title: :noindex: A Bioconductor package for identifying novel Alternative PolyAdenylation Sites \(PAS\) from RNA\-seq data :homepage: https://bioconductor.org/packages/3.14/bioc/html/InPAS.html :license: GPL (>= 2) :recipe: /`bioconductor-inpas `_/`meta.yaml `_ Alternative polyadenylation \(APA\) is one of the important post\- transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA\-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites. .. conda:package:: bioconductor-inpas |downloads_bioconductor-inpas| |docker_bioconductor-inpas| :versions: ``2.2.0-0``,  ``2.0.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.3-0``,  ``1.14.1-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0`` :depends bioconductor-cleanupdtseq: ``>=1.32.0,<1.33.0`` :depends bioconductor-genomeinfodb: ``>=1.30.0,<1.31.0`` :depends bioconductor-genomicfeatures: ``>=1.46.0,<1.47.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-limma: ``>=3.50.0,<3.51.0`` :depends bioconductor-plyranges: ``>=1.14.0,<1.15.0`` :depends bioconductor-preprocesscore: ``>=1.56.0,<1.57.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dbi: :depends r-depmixs4: :depends r-dplyr: :depends r-ggplot2: :depends r-magrittr: :depends r-purrr: :depends r-readr: :depends r-reshape2: :depends r-rsqlite: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-inpas and update with:: conda update bioconductor-inpas or use the docker container:: docker pull quay.io/biocontainers/bioconductor-inpas: (see `bioconductor-inpas/tags`_ for valid values for ````) .. |downloads_bioconductor-inpas| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-inpas.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-inpas :alt: (downloads) .. |docker_bioconductor-inpas| image:: https://quay.io/repository/biocontainers/bioconductor-inpas/status :target: https://quay.io/repository/biocontainers/bioconductor-inpas .. _`bioconductor-inpas/tags`: https://quay.io/repository/biocontainers/bioconductor-inpas?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-inpas/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-inpas/README.html