:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-interactivecomplexheatmap' .. highlight: bash bioconductor-interactivecomplexheatmap ====================================== .. conda:recipe:: bioconductor-interactivecomplexheatmap :replaces_section_title: :noindex: Make Interactive Complex Heatmaps :homepage: https://bioconductor.org/packages/3.18/bioc/html/InteractiveComplexHeatmap.html :license: MIT + file LICENSE :recipe: /`bioconductor-interactivecomplexheatmap `_/`meta.yaml `_ This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities\: 1. on the interactive graphics device\, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development. .. conda:package:: bioconductor-interactivecomplexheatmap |downloads_bioconductor-interactivecomplexheatmap| |docker_bioconductor-interactivecomplexheatmap| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-complexheatmap: ``>=2.18.0,<2.19.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-clisymbols: :depends r-digest: :depends r-fontawesome: :depends r-getoptlong: :depends r-htmltools: :depends r-jsonlite: :depends r-kableextra: ``>=1.3.1`` :depends r-rcolorbrewer: :depends r-shiny: :depends r-svglite: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-interactivecomplexheatmap and update with:: mamba update bioconductor-interactivecomplexheatmap To create a new environment, run:: mamba create --name myenvname bioconductor-interactivecomplexheatmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-interactivecomplexheatmap: (see `bioconductor-interactivecomplexheatmap/tags`_ for valid values for ````) .. |downloads_bioconductor-interactivecomplexheatmap| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-interactivecomplexheatmap.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-interactivecomplexheatmap :alt: (downloads) .. |docker_bioconductor-interactivecomplexheatmap| image:: https://quay.io/repository/biocontainers/bioconductor-interactivecomplexheatmap/status :target: https://quay.io/repository/biocontainers/bioconductor-interactivecomplexheatmap .. _`bioconductor-interactivecomplexheatmap/tags`: https://quay.io/repository/biocontainers/bioconductor-interactivecomplexheatmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactivecomplexheatmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-interactivecomplexheatmap/README.html