:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-interactivedisplay' .. highlight: bash bioconductor-interactivedisplay =============================== .. conda:recipe:: bioconductor-interactivedisplay :replaces_section_title: :noindex: Package for enabling powerful shiny web displays of Bioconductor objects :homepage: https://bioconductor.org/packages/3.18/bioc/html/interactiveDisplay.html :license: Artistic-2.0 :recipe: /`bioconductor-interactivedisplay `_/`meta.yaml `_ :links: biotools: :biotools:`interactivedisplay`, doi: :doi:`10.1038/nmeth.3252` The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects. .. conda:package:: bioconductor-interactivedisplay |downloads_bioconductor-interactivedisplay| |docker_bioconductor-interactivedisplay| :versions: ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.18.0-0``,  ``1.16.0-0`` :depends bioconductor-annotationdbi: ``>=1.62.0,<1.63.0`` :depends bioconductor-biocgenerics: ``>=0.46.0,<0.47.0`` :depends bioconductor-category: ``>=2.66.0,<2.67.0`` :depends bioconductor-interactivedisplaybase: ``>=1.38.0,<1.39.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-biocmanager: :depends r-ggplot2: :depends r-gridsvg: :depends r-plyr: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-shiny: :depends r-xml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-interactivedisplay and update with:: mamba update bioconductor-interactivedisplay To create a new environment, run:: mamba create --name myenvname bioconductor-interactivedisplay with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-interactivedisplay: (see `bioconductor-interactivedisplay/tags`_ for valid values for ````) .. |downloads_bioconductor-interactivedisplay| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-interactivedisplay.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-interactivedisplay :alt: (downloads) .. |docker_bioconductor-interactivedisplay| image:: https://quay.io/repository/biocontainers/bioconductor-interactivedisplay/status :target: https://quay.io/repository/biocontainers/bioconductor-interactivedisplay .. _`bioconductor-interactivedisplay/tags`: https://quay.io/repository/biocontainers/bioconductor-interactivedisplay?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactivedisplay/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-interactivedisplay/README.html