:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-jaspar2020' .. highlight: bash bioconductor-jaspar2020 ======================= .. conda:recipe:: bioconductor-jaspar2020 :replaces_section_title: :noindex: Data package for JASPAR database \(version 2020\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/JASPAR2020.html :license: GPL-2 :recipe: /`bioconductor-jaspar2020 `_/`meta.yaml `_ Data package for JASPAR2020. To search this databases\, please use the package TFBSTools \(\>\= 1.23.1\). .. conda:package:: bioconductor-jaspar2020 |downloads_bioconductor-jaspar2020| |docker_bioconductor-jaspar2020| :versions: ``0.99.10-7``,  ``0.99.10-6``,  ``0.99.10-5``,  ``0.99.10-4``,  ``0.99.10-3``,  ``0.99.10-2``,  ``0.99.10-1``,  ``0.99.10-0`` :depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-jaspar2020 and update with:: mamba update bioconductor-jaspar2020 To create a new environment, run:: mamba create --name myenvname bioconductor-jaspar2020 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-jaspar2020: (see `bioconductor-jaspar2020/tags`_ for valid values for ````) .. |downloads_bioconductor-jaspar2020| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-jaspar2020.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-jaspar2020 :alt: (downloads) .. |docker_bioconductor-jaspar2020| image:: https://quay.io/repository/biocontainers/bioconductor-jaspar2020/status :target: https://quay.io/repository/biocontainers/bioconductor-jaspar2020 .. _`bioconductor-jaspar2020/tags`: https://quay.io/repository/biocontainers/bioconductor-jaspar2020?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-jaspar2020/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-jaspar2020/README.html