:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-jaspar2022'
.. highlight: bash

bioconductor-jaspar2022
=======================

.. conda:recipe:: bioconductor-jaspar2022
   :replaces_section_title:
   :noindex:

   Data package for JASPAR database \(version 2022\)

   :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/JASPAR2022.html
   :license: GPL-2
   :recipe: /`bioconductor-jaspar2022 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-jaspar2022>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-jaspar2022/meta.yaml>`_

   JASPAR is an open\-access database containing manually curated\, non\-redundant transcription factor \(TF\) binding profiles for TFs across six taxonomic groups. In this 9th release\, we expanded the CORE collection with 341 new profiles \(148 for plants\, 101 for vertebrates\, 85 for urochordates\, and 7 for insects\)\, which corresponds to a 19\% expansion over the previous release. To search thisdatabases\, please use the package TFBSTools \(\>\= 1.31.2\).


.. conda:package:: bioconductor-jaspar2022

   |downloads_bioconductor-jaspar2022| |docker_bioconductor-jaspar2022|

   :versions:
      
      

      ``0.99.7-1``,  ``0.99.7-0``

      

   
   :depends bioconductor-biocfilecache: ``>=2.8.0,<2.9.0``
   :depends bioconductor-data-packages: ``>=20230706``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-jaspar2022

   and update with::

      mamba update bioconductor-jaspar2022

  To create a new environment, run::

      mamba create --name myenvname bioconductor-jaspar2022

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-jaspar2022:<tag>

   (see `bioconductor-jaspar2022/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-jaspar2022| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-jaspar2022.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-jaspar2022
   :alt:   (downloads)
.. |docker_bioconductor-jaspar2022| image:: https://quay.io/repository/biocontainers/bioconductor-jaspar2022/status
   :target: https://quay.io/repository/biocontainers/bioconductor-jaspar2022
.. _`bioconductor-jaspar2022/tags`: https://quay.io/repository/biocontainers/bioconductor-jaspar2022?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-jaspar2022";
        var versions = ["0.99.7","0.99.7"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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