:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-karyoploter'
.. highlight: bash

bioconductor-karyoploter
========================

.. conda:recipe:: bioconductor-karyoploter
   :replaces_section_title:
   :noindex:

   Plot customizable linear genomes displaying arbitrary data

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/karyoploteR.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-karyoploter <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-karyoploter>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-karyoploter/meta.yaml>`_

   karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimicks many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates. In addition to the provided data plotting functions\, it is easy to add new ones.


.. conda:package:: bioconductor-karyoploter

   |downloads_bioconductor-karyoploter| |docker_bioconductor-karyoploter|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.24.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.0-0</code>,  <code>1.16.0-1</code>,  <code>1.16.0-0</code>,  <code>1.14.0-0</code>,  <code>1.12.0-0</code>,  </span></summary>
      

      ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.4-0``,  ``1.8.5-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0``
   :depends bioconductor-bamsignals: ``>=1.34.0,<1.35.0``
   :depends bioconductor-biovizbase: ``>=1.50.0,<1.51.0``
   :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0``
   :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0``
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-regioner: ``>=1.34.0,<1.35.0``
   :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0``
   :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-variantannotation: ``>=1.48.0,<1.49.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-bezier: 
   :depends r-digest: 
   :depends r-memoise: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-karyoploter

   and update with::

      mamba update bioconductor-karyoploter

  To create a new environment, run::

      mamba create --name myenvname bioconductor-karyoploter

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-karyoploter:<tag>

   (see `bioconductor-karyoploter/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-karyoploter| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-karyoploter.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-karyoploter
   :alt:   (downloads)
.. |docker_bioconductor-karyoploter| image:: https://quay.io/repository/biocontainers/bioconductor-karyoploter/status
   :target: https://quay.io/repository/biocontainers/bioconductor-karyoploter
.. _`bioconductor-karyoploter/tags`: https://quay.io/repository/biocontainers/bioconductor-karyoploter?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-karyoploter";
        var versions = ["1.28.0","1.26.0","1.24.0","1.20.0","1.18.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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