:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-m6aboost' .. highlight: bash bioconductor-m6aboost ===================== .. conda:recipe:: bioconductor-m6aboost :replaces_section_title: :noindex: m6Aboost :homepage: https://bioconductor.org/packages/3.18/bioc/html/m6Aboost.html :license: Artistic-2.0 :recipe: /`bioconductor-m6aboost `_/`meta.yaml `_ This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette. .. conda:package:: bioconductor-m6aboost |downloads_bioconductor-m6aboost| |docker_bioconductor-m6aboost| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-0`` :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0`` :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-adabag: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dplyr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-m6aboost and update with:: mamba update bioconductor-m6aboost To create a new environment, run:: mamba create --name myenvname bioconductor-m6aboost with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-m6aboost: (see `bioconductor-m6aboost/tags`_ for valid values for ````) .. |downloads_bioconductor-m6aboost| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-m6aboost.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-m6aboost :alt: (downloads) .. |docker_bioconductor-m6aboost| image:: https://quay.io/repository/biocontainers/bioconductor-m6aboost/status :target: https://quay.io/repository/biocontainers/bioconductor-m6aboost .. _`bioconductor-m6aboost/tags`: https://quay.io/repository/biocontainers/bioconductor-m6aboost?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-m6aboost/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-m6aboost/README.html