:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-mafh5.gnomad.v3.1.1.grch38'
.. highlight: bash

bioconductor-mafh5.gnomad.v3.1.1.grch38
=======================================

.. conda:recipe:: bioconductor-mafh5.gnomad.v3.1.1.grch38
   :replaces_section_title:
   :noindex:

   Minor allele frequency data from gnomAD version 3.1.1 for GRCh38

   :homepage: https://bioconductor.org/packages/3.17/data/annotation/html/MafH5.gnomAD.v3.1.1.GRCh38.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-mafh5.gnomad.v3.1.1.grch38 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mafh5.gnomad.v3.1.1.grch38/meta.yaml>`_

   Store minor allele frequency data from the Genome Aggregation Database \(gnomAD version 3.1.1\) for the human genome version GRCh38.


.. conda:package:: bioconductor-mafh5.gnomad.v3.1.1.grch38

   |downloads_bioconductor-mafh5.gnomad.v3.1.1.grch38| |docker_bioconductor-mafh5.gnomad.v3.1.1.grch38|

   :versions:
      
      

      ``3.13.1-1``,  ``3.13.1-0``,  ``3.13.0-2``,  ``3.13.0-1``,  ``3.13.0-0``

      

   
   :depends bioconductor-bsgenome: ``>=1.68.0,<1.69.0``
   :depends bioconductor-data-packages: ``>=20230706``
   :depends bioconductor-genomeinfodb: ``>=1.36.0,<1.37.0``
   :depends bioconductor-genomicranges: ``>=1.52.0,<1.53.0``
   :depends bioconductor-genomicscores: ``>=2.12.0,<2.13.0``
   :depends bioconductor-hdf5array: ``>=1.28.0,<1.29.0``
   :depends bioconductor-iranges: ``>=2.34.0,<2.35.0``
   :depends bioconductor-rhdf5: ``>=2.44.0,<2.45.0``
   :depends bioconductor-s4vectors: ``>=0.38.0,<0.39.0``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-mafh5.gnomad.v3.1.1.grch38

   and update with::

      mamba update bioconductor-mafh5.gnomad.v3.1.1.grch38

  To create a new environment, run::

      mamba create --name myenvname bioconductor-mafh5.gnomad.v3.1.1.grch38

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38:<tag>

   (see `bioconductor-mafh5.gnomad.v3.1.1.grch38/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-mafh5.gnomad.v3.1.1.grch38| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mafh5.gnomad.v3.1.1.grch38.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-mafh5.gnomad.v3.1.1.grch38
   :alt:   (downloads)
.. |docker_bioconductor-mafh5.gnomad.v3.1.1.grch38| image:: https://quay.io/repository/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38/status
   :target: https://quay.io/repository/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38
.. _`bioconductor-mafh5.gnomad.v3.1.1.grch38/tags`: https://quay.io/repository/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-mafh5.gnomad.v3.1.1.grch38";
        var versions = ["3.13.1","3.13.1","3.13.0","3.13.0","3.13.0"];
    </script>






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.. raw:: html
    :file: ../../templates/package_dashboard.html

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