:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mast' .. highlight: bash bioconductor-mast ================= .. conda:recipe:: bioconductor-mast :replaces_section_title: :noindex: Model\-based Analysis of Single Cell Transcriptomics :homepage: https://bioconductor.org/packages/3.18/bioc/html/MAST.html :license: GPL(>= 2) :recipe: /`bioconductor-mast `_/`meta.yaml `_ :links: biotools: :biotools:`mast`, doi: :doi:`10.1186/s13059-015-0844-5` Methods and models for handling zero\-inflated single cell assay data. .. conda:package:: bioconductor-mast |downloads_bioconductor-mast| |docker_bioconductor-mast| :versions: .. raw:: html
1.28.0-01.26.0-01.24.0-01.20.0-01.18.0-01.16.0-11.16.0-01.14.0-01.12.0-0 ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-1``,  ``1.8.1-0``,  ``1.6.1-0``,  ``1.4.1-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-abind: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-ggplot2: :depends r-matrix: :depends r-plyr: :depends r-progress: :depends r-reshape2: :depends r-stringr: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mast and update with:: mamba update bioconductor-mast To create a new environment, run:: mamba create --name myenvname bioconductor-mast with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mast: (see `bioconductor-mast/tags`_ for valid values for ````) .. |downloads_bioconductor-mast| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mast.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mast :alt: (downloads) .. |docker_bioconductor-mast| image:: https://quay.io/repository/biocontainers/bioconductor-mast/status :target: https://quay.io/repository/biocontainers/bioconductor-mast .. _`bioconductor-mast/tags`: https://quay.io/repository/biocontainers/bioconductor-mast?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mast/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mast/README.html