:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-mbttest'
.. highlight: bash

bioconductor-mbttest
====================

.. conda:recipe:: bioconductor-mbttest
   :replaces_section_title:
   :noindex:

   Multiple Beta t\-Tests

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MBttest.html
   :license: GPL-3
   :recipe: /`bioconductor-mbttest <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mbttest>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mbttest/meta.yaml>`_
   :links: biotools: :biotools:`mbttest`, doi: :doi:`10.1371/journal.pone.0123658`

   MBttest method was developed from beta t\-test method of Baggerly et al\(2003\). Compared to baySeq \(Hard castle and Kelly 2010\)\, DESeq \(Anders and Huber 2010\) and exact test \(Robinson and Smyth 2007\, 2008\) and the GLM of McCarthy et al\(2012\)\, MBttest is of high work efficiency\,that is\, it has high power\, high conservativeness of FDR estimation and high stability. MBttest is suit\- able to transcriptomic data\, tag data\, SAGE data \(count data\) from small samples or a few replicate libraries. It can be used to identify genes\, mRNA isoforms or tags differentially expressed between two conditions.


.. conda:package:: bioconductor-mbttest

   |downloads_bioconductor-mbttest| |docker_bioconductor-mbttest|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.30.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.22.0-0</code>,  <code>1.20.0-0</code>,  <code>1.18.0-1</code>,  <code>1.18.0-0</code>,  <code>1.16.0-0</code>,  <code>1.14.0-0</code>,  </span></summary>
      

      ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.1-0``,  ``1.5.0-0``,  ``1.4.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-gplots: 
   :depends r-gtools: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-mbttest

   and update with::

      mamba update bioconductor-mbttest

  To create a new environment, run::

      mamba create --name myenvname bioconductor-mbttest

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-mbttest:<tag>

   (see `bioconductor-mbttest/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-mbttest| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mbttest.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-mbttest
   :alt:   (downloads)
.. |docker_bioconductor-mbttest| image:: https://quay.io/repository/biocontainers/bioconductor-mbttest/status
   :target: https://quay.io/repository/biocontainers/bioconductor-mbttest
.. _`bioconductor-mbttest/tags`: https://quay.io/repository/biocontainers/bioconductor-mbttest?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-mbttest";
        var versions = ["1.30.0","1.28.0","1.26.0","1.22.0","1.20.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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