:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-meb'
.. highlight: bash

bioconductor-meb
================

.. conda:recipe:: bioconductor-meb
   :replaces_section_title:
   :noindex:

   A normalization\-invariant minimum enclosing ball method to detect differentially expressed genes for RNA\-seq and scRNA\-seq data

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MEB.html
   :license: GPL-2
   :recipe: /`bioconductor-meb <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-meb>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-meb/meta.yaml>`_

   This package provides a method to identify differential expression genes in the same or different species. Given that non\-DE genes have some similarities in features\, a scaling\-free minimum enclosing ball \(SFMEB\) model is built to cover those non\-DE genes in feature space\, then those DE genes\, which are enormously different from non\-DE genes\, being regarded as outliers and rejected outside the ball. The method on this package is described in the article \'A minimum enclosing ball method to detect differential expression genes for RNA\-seq data\'. The SFMEB method is extended to the scMEB method that considering two or more potential types of cells or unknown labels scRNA\-seq dataset DEGs identification.


.. conda:package:: bioconductor-meb

   |downloads_bioconductor-meb| |docker_bioconductor-meb|

   :versions:
      
      

      ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-edger: ``>=4.0.0,<4.1.0``
   :depends bioconductor-scater: ``>=1.30.0,<1.31.0``
   :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-e1071: 
   :depends r-wrswor: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-meb

   and update with::

      mamba update bioconductor-meb

  To create a new environment, run::

      mamba create --name myenvname bioconductor-meb

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-meb:<tag>

   (see `bioconductor-meb/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-meb| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-meb.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-meb
   :alt:   (downloads)
.. |docker_bioconductor-meb| image:: https://quay.io/repository/biocontainers/bioconductor-meb/status
   :target: https://quay.io/repository/biocontainers/bioconductor-meb
.. _`bioconductor-meb/tags`: https://quay.io/repository/biocontainers/bioconductor-meb?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-meb";
        var versions = ["1.16.0","1.14.0","1.12.0","1.8.0","1.6.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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