:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-metabolomicsworkbenchr' .. highlight: bash bioconductor-metabolomicsworkbenchr =================================== .. conda:recipe:: bioconductor-metabolomicsworkbenchr :replaces_section_title: :noindex: Metabolomics Workbench in R :homepage: https://bioconductor.org/packages/3.18/bioc/html/metabolomicsWorkbenchR.html :license: GPL-3 :recipe: /`bioconductor-metabolomicsworkbenchr `_/`meta.yaml `_ This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study\, compound\, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included. .. conda:package:: bioconductor-metabolomicsworkbenchr |downloads_bioconductor-metabolomicsworkbenchr| |docker_bioconductor-metabolomicsworkbenchr| :versions: ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-2``,  ``1.0.0-1`` :depends bioconductor-multiassayexperiment: ``>=1.28.0,<1.29.0`` :depends bioconductor-struct: ``>=1.14.0,<1.15.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-httr: :depends r-jsonlite: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-metabolomicsworkbenchr and update with:: mamba update bioconductor-metabolomicsworkbenchr To create a new environment, run:: mamba create --name myenvname bioconductor-metabolomicsworkbenchr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-metabolomicsworkbenchr: (see `bioconductor-metabolomicsworkbenchr/tags`_ for valid values for ````) .. |downloads_bioconductor-metabolomicsworkbenchr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-metabolomicsworkbenchr.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-metabolomicsworkbenchr :alt: (downloads) .. |docker_bioconductor-metabolomicsworkbenchr| image:: https://quay.io/repository/biocontainers/bioconductor-metabolomicsworkbenchr/status :target: https://quay.io/repository/biocontainers/bioconductor-metabolomicsworkbenchr .. _`bioconductor-metabolomicsworkbenchr/tags`: https://quay.io/repository/biocontainers/bioconductor-metabolomicsworkbenchr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-metabolomicsworkbenchr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-metabolomicsworkbenchr/README.html