:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-methimpute' .. highlight: bash bioconductor-methimpute ======================= .. conda:recipe:: bioconductor-methimpute :replaces_section_title: :noindex: Imputation\-guided re\-construction of complete methylomes from WGBS data :homepage: https://bioconductor.org/packages/3.18/bioc/html/methimpute.html :license: Artistic-2.0 :recipe: /`bioconductor-methimpute `_/`meta.yaml `_ This package implements functions for calling methylation for all cytosines in the genome. .. conda:package:: bioconductor-methimpute |downloads_bioconductor-methimpute| |docker_bioconductor-methimpute| :versions: .. raw:: html
1.24.0-01.22.0-01.20.0-11.20.0-01.16.0-21.16.0-11.16.0-01.14.0-01.12.0-1 ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.16.0-2``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.4.1-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-biostrings: ``>=2.70.0,<2.71.0`` :depends bioconductor-biostrings: ``>=2.70.1,<2.71.0a0`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomeinfodb: ``>=1.38.1,<1.39.0a0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.1,<1.55.0a0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-ggplot2: :depends r-minpack.lm: :depends r-rcpp: ``>=0.12.4.5`` :depends r-reshape2: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-methimpute and update with:: mamba update bioconductor-methimpute To create a new environment, run:: mamba create --name myenvname bioconductor-methimpute with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-methimpute: (see `bioconductor-methimpute/tags`_ for valid values for ````) .. |downloads_bioconductor-methimpute| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-methimpute.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-methimpute :alt: (downloads) .. |docker_bioconductor-methimpute| image:: https://quay.io/repository/biocontainers/bioconductor-methimpute/status :target: https://quay.io/repository/biocontainers/bioconductor-methimpute .. _`bioconductor-methimpute/tags`: https://quay.io/repository/biocontainers/bioconductor-methimpute?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methimpute/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-methimpute/README.html