:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-methylclock' .. highlight: bash bioconductor-methylclock ======================== .. conda:recipe:: bioconductor-methylclock :replaces_section_title: :noindex: Methylclock \- DNA methylation\-based clocks :homepage: https://bioconductor.org/packages/3.18/bioc/html/methylclock.html :license: MIT + file LICENSE :recipe: /`bioconductor-methylclock `_/`meta.yaml `_ This package allows to estimate chronological and gestational DNA methylation \(DNAm\) age as well as biological age using different methylation clocks. Chronological DNAm age \(in years\) \: Horvath\'s clock\, Hannum\'s clock\, BNN\, Horvath\'s skin\+blood clock\, PedBE clock and Wu\'s clock. Gestational DNAm age \: Knight\'s clock\, Bohlin\'s clock\, Mayne\'s clock and Lee\'s clocks. Biological DNAm clocks \: Levine\'s clock and Telomere Length\'s clock. .. conda:package:: bioconductor-methylclock |downloads_bioconductor-methylclock| |docker_bioconductor-methylclock| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0.0-0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0a0`` :depends bioconductor-impute: ``>=1.76.0,<1.77.0`` :depends bioconductor-impute: ``>=1.76.0,<1.77.0a0`` :depends bioconductor-methylclockdata: ``>=1.10.0,<1.11.0`` :depends bioconductor-methylclockdata: ``>=1.10.0,<1.11.0a0`` :depends bioconductor-minfi: ``>=1.48.0,<1.49.0`` :depends bioconductor-minfi: ``>=1.48.0,<1.49.0a0`` :depends bioconductor-planet: ``>=1.10.0,<1.11.0`` :depends bioconductor-planet: ``>=1.10.0,<1.11.0a0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-devtools: :depends r-dplyr: :depends r-dynamictreecut: :depends r-ggplot2: :depends r-ggpmisc: :depends r-ggpubr: :depends r-gridextra: :depends r-performanceanalytics: :depends r-quadprog: :depends r-rcpp: ``>=1.0.6`` :depends r-rpmm: :depends r-tibble: :depends r-tidyr: :depends r-tidyverse: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-methylclock and update with:: mamba update bioconductor-methylclock To create a new environment, run:: mamba create --name myenvname bioconductor-methylclock with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-methylclock: (see `bioconductor-methylclock/tags`_ for valid values for ````) .. |downloads_bioconductor-methylclock| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-methylclock.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-methylclock :alt: (downloads) .. |docker_bioconductor-methylclock| image:: https://quay.io/repository/biocontainers/bioconductor-methylclock/status :target: https://quay.io/repository/biocontainers/bioconductor-methylclock .. _`bioconductor-methylclock/tags`: https://quay.io/repository/biocontainers/bioconductor-methylclock?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylclock/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-methylclock/README.html