:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-methylseekr' .. highlight: bash bioconductor-methylseekr ======================== .. conda:recipe:: bioconductor-methylseekr :replaces_section_title: :noindex: Segmentation of Bis\-seq data :homepage: https://bioconductor.org/packages/3.18/bioc/html/MethylSeekR.html :license: GPL (>=2) :recipe: /`bioconductor-methylseekr `_/`meta.yaml `_ :links: biotools: :biotools:`methylseekr` This is a package for the discovery of regulatory regions from Bis\-seq data .. conda:package:: bioconductor-methylseekr |downloads_bioconductor-methylseekr| |docker_bioconductor-methylseekr| :versions: .. raw:: html
1.42.0-01.40.0-01.38.0-01.34.0-01.32.0-01.30.0-11.30.0-01.28.0-01.26.0-0 ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-2``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0`` .. raw:: html
:depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-geneplotter: ``>=1.80.0,<1.81.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-rtracklayer: ``>=1.62.0,<1.63.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-mhsmm: ``>=0.4.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-methylseekr and update with:: mamba update bioconductor-methylseekr To create a new environment, run:: mamba create --name myenvname bioconductor-methylseekr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-methylseekr: (see `bioconductor-methylseekr/tags`_ for valid values for ````) .. |downloads_bioconductor-methylseekr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-methylseekr.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-methylseekr :alt: (downloads) .. |docker_bioconductor-methylseekr| image:: https://quay.io/repository/biocontainers/bioconductor-methylseekr/status :target: https://quay.io/repository/biocontainers/bioconductor-methylseekr .. _`bioconductor-methylseekr/tags`: https://quay.io/repository/biocontainers/bioconductor-methylseekr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methylseekr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-methylseekr/README.html