:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-minfidata' .. highlight: bash bioconductor-minfidata ====================== .. conda:recipe:: bioconductor-minfidata :replaces_section_title: :noindex: Example data for the Illumina Methylation 450k array :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/minfiData.html :license: Artistic-2.0 :recipe: /`bioconductor-minfidata `_/`meta.yaml `_ Data from 6 samples across 2 groups from 450k methylation arrays. .. conda:package:: bioconductor-minfidata |downloads_bioconductor-minfidata| |docker_bioconductor-minfidata| :versions: .. raw:: html
0.48.0-00.46.0-00.44.0-00.40.0-10.40.0-00.38.0-00.36.0-10.36.0-00.34.0-0 ``0.48.0-0``,  ``0.46.0-0``,  ``0.44.0-0``,  ``0.40.0-1``,  ``0.40.0-0``,  ``0.38.0-0``,  ``0.36.0-1``,  ``0.36.0-0``,  ``0.34.0-0``,  ``0.32.0-0``,  ``0.30.0-1``,  ``0.28.0-1``,  ``0.28.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19: ``>=0.6.0,<0.7.0`` :depends bioconductor-illuminahumanmethylation450kmanifest: ``>=0.4.0,<0.5.0`` :depends bioconductor-minfi: ``>=1.48.0,<1.49.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-minfidata and update with:: mamba update bioconductor-minfidata To create a new environment, run:: mamba create --name myenvname bioconductor-minfidata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-minfidata: (see `bioconductor-minfidata/tags`_ for valid values for ````) .. |downloads_bioconductor-minfidata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-minfidata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-minfidata :alt: (downloads) .. |docker_bioconductor-minfidata| image:: https://quay.io/repository/biocontainers/bioconductor-minfidata/status :target: https://quay.io/repository/biocontainers/bioconductor-minfidata .. _`bioconductor-minfidata/tags`: https://quay.io/repository/biocontainers/bioconductor-minfidata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-minfidata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-minfidata/README.html