:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mirmine' .. highlight: bash bioconductor-mirmine ==================== .. conda:recipe:: bioconductor-mirmine :replaces_section_title: :noindex: Data package with miRNA\-seq datasets from miRmine database as RangedSummarizedExperiment :homepage: https://bioconductor.org/packages/3.17/bioc/html/miRmine.html :license: GPL (>= 3) :recipe: /`bioconductor-mirmine `_/`meta.yaml `_ miRmine database is a collection of expression profiles from different publicly available miRNA\-seq datasets\, Panwar et al \(2017\) miRmine\: A Database of Human miRNA Expression\, prepared with this data package as RangedSummarizedExperiment. .. conda:package:: bioconductor-mirmine |downloads_bioconductor-mirmine| |docker_bioconductor-mirmine| :versions: .. raw:: html
1.22.0-01.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-1 ``1.22.0-0``,  ``1.20.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-summarizedexperiment: ``>=1.30.0,<1.31.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mirmine and update with:: mamba update bioconductor-mirmine To create a new environment, run:: mamba create --name myenvname bioconductor-mirmine with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mirmine: (see `bioconductor-mirmine/tags`_ for valid values for ````) .. |downloads_bioconductor-mirmine| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mirmine.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mirmine :alt: (downloads) .. |docker_bioconductor-mirmine| image:: https://quay.io/repository/biocontainers/bioconductor-mirmine/status :target: https://quay.io/repository/biocontainers/bioconductor-mirmine .. _`bioconductor-mirmine/tags`: https://quay.io/repository/biocontainers/bioconductor-mirmine?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirmine/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mirmine/README.html