:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-mirnatap'
.. highlight: bash

bioconductor-mirnatap
=====================

.. conda:recipe:: bioconductor-mirnatap
   :replaces_section_title:
   :noindex:

   miRNAtap\: microRNA Targets \- Aggregated Predictions

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/miRNAtap.html
   :license: GPL-2
   :recipe: /`bioconductor-mirnatap <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mirnatap>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-mirnatap/meta.yaml>`_
   :links: biotools: :biotools:`mirnatap`, doi: :doi:`10.1038/nmeth.3252`

   The package facilitates implementation of workflows requiring miRNA predictions\, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens\, Mus musculus and Rattus norvegicus \(the last one through homology translation\).


.. conda:package:: bioconductor-mirnatap

   |downloads_bioconductor-mirnatap| |docker_bioconductor-mirnatap|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.36.0-0</code>,  <code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.24.0-1</code>,  <code>1.24.0-0</code>,  <code>1.23.0-0</code>,  <code>1.22.0-0</code>,  </span></summary>
      

      ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.23.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-dbi: 
   :depends r-plyr: 
   :depends r-rsqlite: 
   :depends r-sqldf: 
   :depends r-stringr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-mirnatap

   and update with::

      mamba update bioconductor-mirnatap

  To create a new environment, run::

      mamba create --name myenvname bioconductor-mirnatap

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-mirnatap:<tag>

   (see `bioconductor-mirnatap/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-mirnatap| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mirnatap.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-mirnatap
   :alt:   (downloads)
.. |docker_bioconductor-mirnatap| image:: https://quay.io/repository/biocontainers/bioconductor-mirnatap/status
   :target: https://quay.io/repository/biocontainers/bioconductor-mirnatap
.. _`bioconductor-mirnatap/tags`: https://quay.io/repository/biocontainers/bioconductor-mirnatap?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-mirnatap";
        var versions = ["1.36.0","1.34.0","1.32.0","1.28.0","1.26.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mirnatap/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-mirnatap/README.html