:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mlp' .. highlight: bash bioconductor-mlp ================ .. conda:recipe:: bioconductor-mlp :replaces_section_title: :noindex: Mean Log P Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/MLP.html :license: GPL-3 :recipe: /`bioconductor-mlp `_/`meta.yaml `_ :links: biotools: :biotools:`mlp`, doi: :doi:`10.1007/978-3-642-24007-2_12` Pathway analysis based on p\-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process \(GOBP\)\, Molecular Function \(GOMF\) and Cellular Component \(GOCC\)\, Kyoto Encyclopedia of Genes of Genomes \(KEGG\) and Reactome databases. Methodology\, and helper functions to display the results as a table\, barplot of pathway significance\, Gene Ontology graph and pathway significance are available. .. conda:package:: bioconductor-mlp |downloads_bioconductor-mlp| |docker_bioconductor-mlp| :versions: .. raw:: html
1.50.0-01.48.0-01.46.0-01.42.0-01.40.0-01.38.0-11.38.0-01.37.0-01.36.0-0 ``1.50.0-0``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.38.0-0``,  ``1.37.0-0``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-1``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-gplots: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mlp and update with:: mamba update bioconductor-mlp To create a new environment, run:: mamba create --name myenvname bioconductor-mlp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mlp: (see `bioconductor-mlp/tags`_ for valid values for ````) .. |downloads_bioconductor-mlp| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mlp.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mlp :alt: (downloads) .. |docker_bioconductor-mlp| image:: https://quay.io/repository/biocontainers/bioconductor-mlp/status :target: https://quay.io/repository/biocontainers/bioconductor-mlp .. _`bioconductor-mlp/tags`: https://quay.io/repository/biocontainers/bioconductor-mlp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mlp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mlp/README.html