:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mmappr2data' .. highlight: bash bioconductor-mmappr2data ======================== .. conda:recipe:: bioconductor-mmappr2data :replaces_section_title: :noindex: Sample Data for MMAPPR2 :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/MMAPPR2data.html :license: GPL-3 :recipe: /`bioconductor-mmappr2data `_/`meta.yaml `_ Contains data for illustration purposes in the MMAPPR2 package\, namely simulated BAM files containing RNA\-Seq data for a mutation in the slc24a5 gene\, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region. .. conda:package:: bioconductor-mmappr2data |downloads_bioconductor-mmappr2data| |docker_bioconductor-mmappr2data| :versions: .. raw:: html
1.16.0-01.14.0-01.12.0-01.8.0-11.8.0-01.6.0-01.4.0-11.4.0-01.2.0-0 ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mmappr2data and update with:: mamba update bioconductor-mmappr2data To create a new environment, run:: mamba create --name myenvname bioconductor-mmappr2data with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mmappr2data: (see `bioconductor-mmappr2data/tags`_ for valid values for ````) .. |downloads_bioconductor-mmappr2data| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mmappr2data.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mmappr2data :alt: (downloads) .. |docker_bioconductor-mmappr2data| image:: https://quay.io/repository/biocontainers/bioconductor-mmappr2data/status :target: https://quay.io/repository/biocontainers/bioconductor-mmappr2data .. _`bioconductor-mmappr2data/tags`: https://quay.io/repository/biocontainers/bioconductor-mmappr2data?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mmappr2data/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mmappr2data/README.html