:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-monalisa'
.. highlight: bash

bioconductor-monalisa
=====================

.. conda:recipe:: bioconductor-monalisa
   :replaces_section_title:
   :noindex:

   Binned Motif Enrichment Analysis and Visualization

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/monaLisa.html
   :license: GPL (>= 3)
   :recipe: /`bioconductor-monalisa <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-monalisa>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-monalisa/meta.yaml>`_

   Useful functions to work with sequence motifs in the analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility or expression. Functions to produce informative visualizations of the obtained results are also provided.


.. conda:package:: bioconductor-monalisa

   |downloads_bioconductor-monalisa| |docker_bioconductor-monalisa|

   :versions:
      
      

      ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0``
   :depends bioconductor-complexheatmap: ``>=2.18.0,<2.19.0``
   :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0``
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends bioconductor-tfbstools: ``>=1.40.0,<1.41.0``
   :depends bioconductor-xvector: ``>=0.42.0,<0.43.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-circlize: 
   :depends r-glmnet: 
   :depends r-stabs: 
   :depends r-vioplot: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-monalisa

   and update with::

      mamba update bioconductor-monalisa

  To create a new environment, run::

      mamba create --name myenvname bioconductor-monalisa

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-monalisa:<tag>

   (see `bioconductor-monalisa/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-monalisa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-monalisa.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-monalisa
   :alt:   (downloads)
.. |docker_bioconductor-monalisa| image:: https://quay.io/repository/biocontainers/bioconductor-monalisa/status
   :target: https://quay.io/repository/biocontainers/bioconductor-monalisa
.. _`bioconductor-monalisa/tags`: https://quay.io/repository/biocontainers/bioconductor-monalisa?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-monalisa";
        var versions = ["1.8.0","1.6.0","1.4.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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