:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-mousethymusageing' .. highlight: bash bioconductor-mousethymusageing ============================== .. conda:recipe:: bioconductor-mousethymusageing :replaces_section_title: :noindex: Single\-cell Transcriptomics Data of the Ageing Mouse Thymus :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/MouseThymusAgeing.html :license: GPL-3 :recipe: /`bioconductor-mousethymusageing `_/`meta.yaml `_ This package provides data access to counts matrices and meta\-data for single\-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re\-use of data from Baran\-Gale \_et al.\_ in a consistent format that includes relevant and informative meta\-data. .. conda:package:: bioconductor-mousethymusageing |downloads_bioconductor-mousethymusageing| |docker_bioconductor-mousethymusageing| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-mousethymusageing and update with:: mamba update bioconductor-mousethymusageing To create a new environment, run:: mamba create --name myenvname bioconductor-mousethymusageing with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-mousethymusageing: (see `bioconductor-mousethymusageing/tags`_ for valid values for ````) .. |downloads_bioconductor-mousethymusageing| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-mousethymusageing.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-mousethymusageing :alt: (downloads) .. |docker_bioconductor-mousethymusageing| image:: https://quay.io/repository/biocontainers/bioconductor-mousethymusageing/status :target: https://quay.io/repository/biocontainers/bioconductor-mousethymusageing .. _`bioconductor-mousethymusageing/tags`: https://quay.io/repository/biocontainers/bioconductor-mousethymusageing?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mousethymusageing/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-mousethymusageing/README.html