:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-msbackendmassbank'
.. highlight: bash

bioconductor-msbackendmassbank
==============================

.. conda:recipe:: bioconductor-msbackendmassbank
   :replaces_section_title:
   :noindex:

   Mass Spectrometry Data Backend for MassBank record Files

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MsBackendMassbank.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-msbackendmassbank <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendmassbank>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendmassbank/meta.yaml>`_

   Mass spectrometry \(MS\) data backend supporting import and export of MS\/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.


.. conda:package:: bioconductor-msbackendmassbank

   |downloads_bioconductor-msbackendmassbank| |docker_bioconductor-msbackendmassbank|

   :versions:
      
      

      ``1.10.1-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-mscoreutils: ``>=1.14.0,<1.15.0``
   :depends bioconductor-protgenerics: ``>=1.34.0,<1.35.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-spectra: ``>=1.12.0,<1.13.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-dbi: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-msbackendmassbank

   and update with::

      mamba update bioconductor-msbackendmassbank

  To create a new environment, run::

      mamba create --name myenvname bioconductor-msbackendmassbank

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-msbackendmassbank:<tag>

   (see `bioconductor-msbackendmassbank/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-msbackendmassbank| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msbackendmassbank.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-msbackendmassbank
   :alt:   (downloads)
.. |docker_bioconductor-msbackendmassbank| image:: https://quay.io/repository/biocontainers/bioconductor-msbackendmassbank/status
   :target: https://quay.io/repository/biocontainers/bioconductor-msbackendmassbank
.. _`bioconductor-msbackendmassbank/tags`: https://quay.io/repository/biocontainers/bioconductor-msbackendmassbank?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-msbackendmassbank";
        var versions = ["1.10.1","1.8.0","1.6.0","1.2.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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