:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-msbackendrawfilereader'
.. highlight: bash

bioconductor-msbackendrawfilereader
===================================

.. conda:recipe:: bioconductor-msbackendrawfilereader
   :replaces_section_title:
   :noindex:

   Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MsBackendRawFileReader.html
   :license: GPL-3
   :recipe: /`bioconductor-msbackendrawfilereader <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendrawfilereader>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendrawfilereader/meta.yaml>`_

   implements a MsBackend for the Spectra package using Thermo Fisher Scientific\'s NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.


.. conda:package:: bioconductor-msbackendrawfilereader

   |downloads_bioconductor-msbackendrawfilereader| |docker_bioconductor-msbackendrawfilereader|

   :versions:
      
      

      ``1.8.1-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-mscoreutils: ``>=1.14.0,<1.15.0``
   :depends bioconductor-rawrr: ``>=1.10.0,<1.11.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-spectra: ``>=1.12.0,<1.13.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-msbackendrawfilereader

   and update with::

      mamba update bioconductor-msbackendrawfilereader

  To create a new environment, run::

      mamba create --name myenvname bioconductor-msbackendrawfilereader

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-msbackendrawfilereader:<tag>

   (see `bioconductor-msbackendrawfilereader/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-msbackendrawfilereader| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msbackendrawfilereader.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-msbackendrawfilereader
   :alt:   (downloads)
.. |docker_bioconductor-msbackendrawfilereader| image:: https://quay.io/repository/biocontainers/bioconductor-msbackendrawfilereader/status
   :target: https://quay.io/repository/biocontainers/bioconductor-msbackendrawfilereader
.. _`bioconductor-msbackendrawfilereader/tags`: https://quay.io/repository/biocontainers/bioconductor-msbackendrawfilereader?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-msbackendrawfilereader";
        var versions = ["1.8.1","1.6.0","1.4.0","1.0.0"];
    </script>






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.. raw:: html
    :file: ../../templates/package_dashboard.html

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