:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-msbackendsql'
.. highlight: bash

bioconductor-msbackendsql
=========================

.. conda:recipe:: bioconductor-msbackendsql
   :replaces_section_title:
   :noindex:

   SQL\-based Mass Spectrometry Data Backend

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MsBackendSql.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-msbackendsql <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendsql>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msbackendsql/meta.yaml>`_

   SQL\-based mass spectrometry \(MS\) data backend supporting also storange and handling of very large data sets. Objects from this package are supposed to be used with the Spectra Bioconductor package. Through the MsBackendSql with its minimal memory footprint\, this package thus provides an alternative MS data representation for very large or remote MS data sets.


.. conda:package:: bioconductor-msbackendsql

   |downloads_bioconductor-msbackendsql| |docker_bioconductor-msbackendsql|

   :versions:
      
      

      ``1.2.0-0``,  ``1.0.1-0``

      

   
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-mscoreutils: ``>=1.14.0,<1.15.0``
   :depends bioconductor-protgenerics: ``>=1.34.0,<1.35.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-spectra: ``>=1.12.0,<1.13.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-data.table: 
   :depends r-dbi: 
   :depends r-progress: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-msbackendsql

   and update with::

      mamba update bioconductor-msbackendsql

  To create a new environment, run::

      mamba create --name myenvname bioconductor-msbackendsql

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-msbackendsql:<tag>

   (see `bioconductor-msbackendsql/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-msbackendsql| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msbackendsql.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-msbackendsql
   :alt:   (downloads)
.. |docker_bioconductor-msbackendsql| image:: https://quay.io/repository/biocontainers/bioconductor-msbackendsql/status
   :target: https://quay.io/repository/biocontainers/bioconductor-msbackendsql
.. _`bioconductor-msbackendsql/tags`: https://quay.io/repository/biocontainers/bioconductor-msbackendsql?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-msbackendsql";
        var versions = ["1.2.0","1.0.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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