:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-msstats' .. highlight: bash bioconductor-msstats ==================== .. conda:recipe:: bioconductor-msstats :replaces_section_title: :noindex: Protein Significance Analysis in DDA\, SRM and DIA for Label\-free or Label\-based Proteomics Experiments :homepage: https://bioconductor.org/packages/3.18/bioc/html/MSstats.html :license: Artistic-2.0 :recipe: /`bioconductor-msstats `_/`meta.yaml `_ :links: biotools: :biotools:`msstats` A set of tools for statistical relative protein significance analysis in DDA\, SRM and DIA experiments. .. conda:package:: bioconductor-msstats |downloads_bioconductor-msstats| |docker_bioconductor-msstats| :versions: .. raw:: html
4.10.0-04.8.3-04.6.0-14.6.0-04.2.0-24.2.0-14.2.0-04.0.0-03.22.1-1 ``4.10.0-0``,  ``4.8.3-0``,  ``4.6.0-1``,  ``4.6.0-0``,  ``4.2.0-2``,  ``4.2.0-1``,  ``4.2.0-0``,  ``4.0.0-0``,  ``3.22.1-1``,  ``3.22.1-0``,  ``3.22.0-0``,  ``3.20.1-0``,  ``3.20.0-0``,  ``3.18.0-0``,  ``3.16.0-1``,  ``3.14.1-0``,  ``3.14.0-0`` .. raw:: html
:depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-limma: ``>=3.58.1,<3.59.0a0`` :depends bioconductor-marray: ``>=1.80.0,<1.81.0`` :depends bioconductor-marray: ``>=1.80.0,<1.81.0a0`` :depends bioconductor-msstatsconvert: ``>=1.12.0,<1.13.0`` :depends bioconductor-msstatsconvert: ``>=1.12.0,<1.13.0a0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-checkmate: :depends r-data.table: :depends r-ggplot2: :depends r-ggrepel: :depends r-gplots: :depends r-lme4: :depends r-mass: :depends r-rcpp: :depends r-rcpparmadillo: :depends r-statmod: :depends r-survival: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-msstats and update with:: mamba update bioconductor-msstats To create a new environment, run:: mamba create --name myenvname bioconductor-msstats with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-msstats: (see `bioconductor-msstats/tags`_ for valid values for ````) .. |downloads_bioconductor-msstats| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msstats.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-msstats :alt: (downloads) .. |docker_bioconductor-msstats| image:: https://quay.io/repository/biocontainers/bioconductor-msstats/status :target: https://quay.io/repository/biocontainers/bioconductor-msstats .. _`bioconductor-msstats/tags`: https://quay.io/repository/biocontainers/bioconductor-msstats?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msstats/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-msstats/README.html